PathwaySpace is an R package that creates landscape images from graphs containing vertices (nodes), edges (lines), and a signal associated with the vertices.

Network diffusion-based analysis of omics for the identifcation of differentially enriched modules.

A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

Modelling and Optimization of Models with a focus on Healthcare and Biological Networks

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Molecular interactions inference from single-cell multi-omics data

mND uses multi-layer Network Diffusion to find gene networks that contain high scoring genes. It considers two or more "layers" of genome-wide scores and an interactome.

Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.

GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]

This is the backend service repository that makes Drugst.One work. Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.

Julia implementation of Hierarchical HotNet method

3D Spiking neural network simulation exploring Spike Timing Dependent Plasticity (STDP)

OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.

Mutual Interactors: A graph-based machine learning model with applications in molecular phenotype prediction

Explore biomolecular pathways in Reactome from the command-line or a Python script

Cypher Queries regarding Hematological Markers Network Markers DB in Neo4j

Visualisation and Analysis of Networks conTaining Experimental Data

DANTE is a software tool for pairwise alignment of dynamic networks. It computes the topological node similarities via temporal embedding.

R package for de novo pathway enrichment using KeyPathwayMiner

R Package: Steiner tree approach for graph analysis