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@krishnanlab

Krishnan Lab

Laboratory for Computational Genomics and Biomedical Data Science

Popular repositories

  1. PecanPy PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 146 21

  2. teaching teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 23 19

  3. txt2onto txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    Python 23 5

  4. obnb obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 20

  5. PyGenePlexus PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 19 3

  6. GenePlexus GenePlexus Public

    Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"

    Python 10 3

Repositories

Showing 10 of 28 repositories
  • PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 146 BSD-3-Clause 21 15 (1 issue needs help) 6 Updated May 24, 2024
  • geneplexus-app-v2 Public

    GenePlexus App - backend (cloud functions) and frontend

    TypeScript 2 0 11 1 Updated May 23, 2024
  • PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 19 3 12 6 Updated May 8, 2024
  • SNNomics Public

    Ranking the similarities of omics samples using siamese neural networks

    Python 0 MIT 0 0 0 Updated May 8, 2024
  • .github Public
    Python 0 BSD-3-Clause 0 0 3 Updated May 1, 2024
  • pydab Public

    A _blazingly fast_ Python package for modifying and converting DAB files

    Python 2 MIT 0 3 6 Updated Apr 29, 2024
  • obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 20 MIT 0 53 6 Updated Apr 29, 2024
  • Age-sex_signatures_in_humans_code Public

    code for Human pan-body age- and sex-specific molecular phenomena inferred from public transcriptome data using machine learning

    HTML 0 0 0 0 Updated Mar 8, 2024
  • HTML 1 BSD-3-Clause 0 2 0 Updated Feb 13, 2024
  • teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 23 MIT 19 0 0 Updated Feb 5, 2024

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