Embeddings to Network Alignment - align biological networks between two species

Identification of heterogeneous biomarkers for breast cancer using Clustering and PageRank algorithms (bioinformatics)

GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]

Implements the MAGNN algorithm to predict concentration change sign for metabolites using protein-protein-metabolite interaction (PPMI) networks

Parameter advising for biological pathway creation algorithms

Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM

Protein Interaction Network Reconstruction with a Structural Gated Attention Deep Model by Incorporating Network Structure Information

Reproducibility repo for Shashikadze et al. "Maternal hyperglycemia induces alterations in hepatic amino acid, glucose and lipid metabolism of neonatal offspring: Multi-omics insights from a diabetic pig model".

Multi-omics differential expression and integration using PPI networks

Reinforcement learning community detection method using known communities

Code for publication: Hypergraph Geometry Reflects Higher-Order Dynamics in Protein Interaction Networks; Kevin A. Murgas, Emil Saucan, Romeil Sandhu; Scientific Reports (2022)

Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL

The work focuses on assessing the host-pathogen 21 protein interaction affinity of the coronavirus family, having 44 different variants. In light of these 22 considerations, a GO-semantic scoring function is provided based on Gene Ontology (GO) graphs 23 for determining the binding affinity of any two proteins at the organism level.

data integration and network analysis of post-translational modification based on mass spectrometry data