A compilation of pathway gene sets
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Updated
Apr 2, 2016 - Jupyter Notebook
A compilation of pathway gene sets
#metawinterschool contribution by BiGCaT
KNIME nodes for WikiPathways.
R client package for the WikiPathways API.
WikiPathways Summit Planning
Repository for code to create the Europe PMC external links
Collect chemical reactions from a GPML file and look for matching Rhea equations.
Integration of pathway-related information from WikiPathways in BEL
Ready-to-use curated genesets for cinaR
OpenAPI to extract information from WikiPathways.
Converts Reactome pathways to GPML format
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
Add a description, image, and links to the wikipathways topic page so that developers can more easily learn about it.
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