Whole Genome Sequencing analysis, WGS analysis
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Updated
Jul 5, 2023
Whole Genome Sequencing analysis, WGS analysis
Call and score variants from WGS/WES of rare disease patients.
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
Data management of large-scale whole-genome sequence variant calls (Development version only)
SCHeMa (Scheduler for scientific Containers on clusters of Heterogeneous Machines) is an open source platform to facilitate the execution and reproducibility of computational experiments on heterogeneous clusters.
The DKFZ alignment workflow plugin originally developed at the eilslabs
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap
Whole exome sequencing snakemake workflow based on GATK best practice
Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.
The snakemake workflow for whole-exome sequencing analysis and generating vcf files
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