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27 Open 138 Closed
27 Open 138 Closed
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Issues list

Turn on revive linter in golangci config devops Improvements to DevOps (e.g. GitHub actions, linting, etc.) enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed low priority Would be nice to fix, but doesn't have to happen right now/there are more important things stale
#442 opened Feb 2, 2024 by carreter
1
Genbank parser needs heavy refactor or a rewrite enhancement New feature or request hard A major or complex undertaking medium priority The default priority for a new issue. stale
#434 opened Dec 20, 2023 by carreter
8
Proposal - New external package - rebased enhancement New feature or request help wanted Extra attention is needed intermediate Will take some time to fix medium priority The default priority for a new issue. stale
#426 opened Dec 12, 2023 by TimothyStiles
2
Proposal: Create a biological reviewers group needs-triage An issue that needs to be triaged proposal A proposed feature or enhancement stale
#422 opened Dec 12, 2023 by TimothyStiles
2
Each fragment in a PCR amplification should have a circular tag proposal A proposed feature or enhancement stale
#413 opened Dec 6, 2023 by Koeng101
1
Tutorial and example tests for refactored golden gate cloning needs-triage An issue that needs to be triaged stale
#399 opened Nov 11, 2023 by TimothyStiles
1
Genbank parser doesn't handle feature attributes with colliding names. bug Something isn't working hard A major or complex undertaking help wanted Extra attention is needed high priority High priority - something is broken or missing that is critical for users or developers. stale
#383 opened Oct 6, 2023 by TimothyStiles
5
Refactor clone package enhancement New feature or request high priority High priority - something is broken or missing that is critical for users or developers. intermediate Will take some time to fix stale ux Issues with user experience of using the package
#367 opened Sep 23, 2023 by carreter
@carreter
5
Create Automated Benchmarking Suite devops Improvements to DevOps (e.g. GitHub actions, linting, etc.) hard A major or complex undertaking low priority Would be nice to fix, but doesn't have to happen right now/there are more important things stale
#366 opened Sep 23, 2023 by TimothyStiles
5
Improve and standardize parsing API enhancement New feature or request hard A major or complex undertaking high priority High priority - something is broken or missing that is critical for users or developers. stale ux Issues with user experience of using the package
#364 opened Sep 23, 2023 by carreter v1.0
@Koeng101
1
Write more thorough explanation of alignment algorithms in align.go documentation Improvements or additions to documentation intermediate Will take some time to fix low priority Would be nice to fix, but doesn't have to happen right now/there are more important things stale
#363 opened Sep 23, 2023 by carreter v1.0
1
Create a tutorial series around a real-world, working example documentation Improvements or additions to documentation hard A major or complex undertaking high priority High priority - something is broken or missing that is critical for users or developers. stale
#362 opened Sep 23, 2023 by carreter v1.0
4
Implement LinearFold for prediction of RNA secondary structure easy A quick and easy fix! enhancement New feature or request medium priority The default priority for a new issue. stale
#361 opened Sep 23, 2023 by carreter v1.0
6
Implement Gibson Assembly easy A quick and easy fix! enhancement New feature or request high priority High priority - something is broken or missing that is critical for users or developers. stale
#359 opened Sep 23, 2023 by carreter v1.0
@carreter
5
Pileup parsing deletion with . enhancement New feature or request hard A major or complex undertaking medium priority The default priority for a new issue. stale
#355 opened Sep 21, 2023 by Koeng101 v1.0
@Koeng101
4
Feature.GetSequence() always returns a nil error value bug Something isn't working easy A quick and easy fix! good first issue Good for newcomers help wanted Extra attention is needed low priority Would be nice to fix, but doesn't have to happen right now/there are more important things stale
#352 opened Sep 20, 2023 by carreter v1.0
7
Common Genbank Feature.Type values should be enumerated easy A quick and easy fix! enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed low priority Would be nice to fix, but doesn't have to happen right now/there are more important things stale
#351 opened Sep 20, 2023 by carreter
4
Create top-level types.go to define types shared across packages easy A quick and easy fix! proposal A proposed feature or enhancement question Further information is requested
#347 opened Sep 15, 2023 by carreter
6
Improvements to issue/PR labeling/management devops Improvements to DevOps (e.g. GitHub actions, linting, etc.) documentation Improvements or additions to documentation enhancement New feature or request intermediate Will take some time to fix medium priority The default priority for a new issue.
#346 opened Sep 15, 2023 by carreter
12 of 13 tasks
@carreter
16
Gff.AddFeature() code is misleading and mutates Feature state bug Something isn't working easy A quick and easy fix! good first issue Good for newcomers medium priority The default priority for a new issue. stale
#342 opened Sep 11, 2023 by carreter v1.0
5
slow5 doesn't detect newline bug Something isn't working easy A quick and easy fix! medium priority The default priority for a new issue. stale
#327 opened Aug 8, 2023 by Koeng101 v1.0
@Koeng101
4
Failed to parse Saccharomyces cerevisiae S288C chromosome IX bug Something isn't working high priority High priority - something is broken or missing that is critical for users or developers. intermediate Will take some time to fix
#313 opened May 29, 2023 by Koeng101 v1.0
8
Certain tests fail on windows bug Something isn't working high priority High priority - something is broken or missing that is critical for users or developers. intermediate Will take some time to fix stale windows Issues that are specific to Windows clients.
#301 opened Mar 23, 2023 by toothsy v1.0
4
PDBx Parser enhancement New feature or request hard A major or complex undertaking medium priority The default priority for a new issue.
#297 opened Mar 21, 2023 by TimothyStiles v1.0
@carreter
10
Default codon tables enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed intermediate Will take some time to fix low priority Would be nice to fix, but doesn't have to happen right now/there are more important things stale
#247 opened Apr 5, 2022 by Koeng101 v1.0
6
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