R package for pedigree inference based on SNP data
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Updated
May 28, 2024 - Fortran
R package for pedigree inference based on SNP data
Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
Data management of large-scale whole-genome sequence variant calls (Development version only)
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
web-based protein structure viewer and analysis tool interactively or in batch mode
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
Web-приложение для отрисовки данных, обработанных с помощью yMapper'а.
Phasing, haplotype reconstruction and crossover detection with single-nucleotide polymorphism data from multiparental populations.
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
An interactive graphical illustration of genetic associations and their biological context
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
A tool for simulating random mutations in any genome
Scripts to automate the phasing with several tools
GPU-based implementation for the HLA genotype imputation method (HIBAG)
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