Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)
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Updated
Dec 10, 2021 - R
Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)
The QC software for the OBO version of HPO
Automatic estimation of storage root length, diameter and volume.
This is a public repository for relevant code from the publication of the same name.
Scripts for the HEB25_population
PhD thesis written in Quarto.
Explore the phenome ✨🎆✨
HPO web browser created with Vaadin
my snippets and notes for compact plants phenomics center at WSU
Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae
Scaleable multitask Network
Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.
LI Detector analytical pipeline for colony-based high-throughput screens.
This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.
🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
Computation of root phenes from 3D point clouds.
HPO archive of the ontology and annotations
Coordination of Data Products and Standards for TERRA reference data
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