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Authors: Brian Schilder

Most recent update: Nov-21-2023

R package for the exploration and analysis of many

genotype-phenotype datasets at once.

Installation

if(require("remotes")} install.packages("remotes")
remotes::install_github("neurogenomics/phenomix")

Documentation

Documentation site

Vignette: Celltype enrichment

Session Info

utils::sessionInfo()

## R version 4.3.1 (2023-06-16)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS Sonoma 14.1
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## time zone: America/New_York
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## loaded via a namespace (and not attached):
##  [1] gtable_0.3.4        jsonlite_1.8.7      renv_1.0.3         
##  [4] dplyr_1.1.4         compiler_4.3.1      BiocManager_1.30.22
##  [7] tidyselect_1.2.0    rvcheck_0.2.1       scales_1.2.1       
## [10] yaml_2.3.7          fastmap_1.1.1       here_1.0.1         
## [13] ggplot2_3.4.4       R6_2.5.1            generics_0.1.3     
## [16] knitr_1.45          yulab.utils_0.1.0   tibble_3.2.1       
## [19] desc_1.4.2          dlstats_0.1.7       rprojroot_2.0.4    
## [22] munsell_0.5.0       pillar_1.9.0        RColorBrewer_1.1-3 
## [25] rlang_1.1.2         utf8_1.2.4          cachem_1.0.8       
## [28] badger_0.2.3        xfun_0.41           fs_1.6.3           
## [31] memoise_2.0.1.9000  cli_3.6.1           magrittr_2.0.3     
## [34] rworkflows_1.0.2    digest_0.6.33       grid_4.3.1         
## [37] rstudioapi_0.15.0   lifecycle_1.0.4     vctrs_0.6.4        
## [40] data.table_1.14.8   evaluate_0.23       glue_1.6.2         
## [43] fansi_1.0.5         colorspace_2.1-0    rmarkdown_2.25     
## [46] tools_4.3.1         pkgconfig_2.0.3     htmltools_0.5.7