Snakemake pipelines for nanopore sequencing data archiving and processing
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Updated
Feb 2, 2022 - Python
Snakemake pipelines for nanopore sequencing data archiving and processing
Snakemake profile for running jobs on an LSF cluster
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
Statistical inference of recent positive selection using IBD segments
A snakemake workflow for the OrthoEvol python package.
A minimal Snakemake pipeline.
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
write as many snakemake files and with much faster iterations and completely from the single files or from the list of the files with the path appended. This will make your writing the snakemake easier
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
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