Analyses of Penter, Borji & Nagler et al., 2023
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Updated
Nov 1, 2023 - R
Analyses of Penter, Borji & Nagler et al., 2023
Get L. pneumophila ST from long-read or hybrid assemblies.
Build highly accurate transcripts from long-read RNA data
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
Benchmarking for long-reads assembler
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Magnipore: Differential single nucleotide changes of ONT signals
Wrapper to read fast5 and pod5 files.
Unofficial client library to get data from Huawei router
The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).
Wrapper to read fast5, slow5, blow5 and pod5 files.
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
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