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@HKU-BAL

BAL

HKUCS Bioinformatics Algorithm Lab

Pinned

  1. Clair3 Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Python 220 26

  2. ClairS ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    Python 54 5

  3. ClairS-TO ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    Python 31 2

Repositories

Showing 10 of 29 repositories
  • ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    Python 54 BSD-3-Clause 5 4 0 Updated May 4, 2024
  • Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Python 220 26 5 0 Updated Apr 30, 2024
  • ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    Python 31 BSD-3-Clause 2 0 0 Updated Apr 26, 2024
  • Clair3-Nova Public

    de novo variant calling in trio using Nanopore long-reads

    Python 0 BSD-3-Clause 0 1 0 Updated Apr 19, 2024
  • Clair3-RNA Public

    Clair3-RNA - a long-read small variant caller for RNA sequencing data

    Python 8 BSD-3-Clause 0 0 0 Updated Apr 19, 2024
  • Clair3-Trio Public archive

    Clair3-Trio: variant calling in trio using Nanopore long-reads

    Python 14 BSD-3-Clause 1 2 0 Updated Apr 18, 2024
  • ClusterV-Web Public
    C 3 BSD-3-Clause 0 0 0 Updated Dec 27, 2023
  • ClusterV Public

    ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

    Python 7 BSD-3-Clause 0 1 0 Updated Dec 11, 2023
  • CellContrast Public

    CellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive Learning

    Jupyter Notebook 3 MIT 0 0 0 Updated Dec 1, 2023
  • Clair3-MP Public

    variant calling using with sequencing data from multiple platforms

    Python 4 BSD-3-Clause 2 2 0 Updated Jul 14, 2023
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