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Popular repositories

  1. ONTmompS ONTmompS Public

    Get L. pneumophila ST from long-read or hybrid assemblies.

    Python 3

  2. SeqDepth SeqDepth Public

    Calculate sequencing depth of Illumina short-reads

    Python 1 1

  3. susCovONT susCovONT Public

    Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing

    Python 1 2

  4. msctrees msctrees Public

    Scripts that are part of our MSc-students' work

  5. Asmbl Asmbl Public

    Assembly and quality assessment of Illumina short-reads

    Python 2

  6. ont-basecalling ont-basecalling Public

    Script for ONT-basecalling

    Python