Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
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Updated
May 23, 2024 - Nextflow
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
Nextflow pipeline to assemble genomes from nanopore reads.
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
WtP: Phage identification via nextflow and docker or singularity
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
Bayesian phylogenetic analysis
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
This workflow for molecular dynamics simulation of proteins
RNA-Seq pipeline
Nextflow Scripts/Workflows for Bioinformatics
modules for processing and analyzing single cell data using Nextflow
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
A simple fastp-MultiQC nextflow pipeline
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