Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Updated
May 9, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Tools for visualising microbial community amplicon data
In-silico PCR, primer design and padlock design for in-situ sequencing
Various functions for analysis of microbial community data
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
microhaplotype visualizer and analyzer
Metagenomics calibration R package
Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
A web app for environmental DNA metabarcoding analysis
CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
SCRAPT: An Iterative Algorithm for Clustering Large 16S rRNA Gene Datasets
Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data
a set of tools for viral amplicon schemes
Interactive application to explore various ecological diversity metrics
AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing
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