mtdna
Here are 22 public repositories matching this topic...
Reconstruction and analysis of viral and host genomes at multi-organ level
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May 16, 2024 - Shell
This page is contains all the software and commands I've used for my mtDNA analysis.
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May 2, 2024
A bioinformatics pipeline to analyze mtDNA from NGS data
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Mar 5, 2024 - Python
Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
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Oct 9, 2023 - Shell
Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
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Jul 19, 2023 - Python
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Jun 21, 2023 - Jupyter Notebook
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
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May 24, 2023
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
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Feb 28, 2023 - Java
Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.
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Jan 4, 2022 - Python
SRTI framework to perform variant calling and prioritization of WES
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Dec 9, 2021 - Perl
The mitochondrial workbench
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Sep 17, 2021 - Java
SRTI - web server to analyze mtDNA
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Apr 23, 2021 - Perl
Mapping of RNAseq data on reference genome using Hisat2 for reduced mismatch penalties
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Dec 2, 2020 - Shell
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
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Mar 27, 2020 - Shell
Contamination detection workflow based on mtDNA
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Nov 17, 2019
This repository contains practical data analyses exercises for the special course on Paleogenomics and Anthropology held at the National School of Anthropology of Mexico (ENAH), May 6 to 10, 2019. Topics include performing QC on aDNA NGS data, assigning mtDNA haplogroups and testing hypotheses w/PCA and ADMIXTURE analyses. No previous command-li…
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May 21, 2019 - OpenEdge ABL
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