An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

Rapid population clustering with autoencoders

An R package and web app for spatial visualisation of admixture on a projected map

Tutorial for visualising admixture on a map

Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis

Utilities for analyzing next generation sequencing data.

Repo to analyze population genetic data with many different methods

tips and tricks in genome-wide association studies - a tutorial

Tool to estimate purity of tumor samples exploiting DNA Methylation data

faster haplotype-based admixture inference and dating software

Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data

Julia wrapper of the ADMIXTURE program for estimating ancestry

This repository contains practical data analyses exercises for the special course on Paleogenomics and Anthropology held at the National School of Anthropology of Mexico (ENAH), May 6 to 10, 2019. Topics include performing QC on aDNA NGS data, assigning mtDNA haplogroups and testing hypotheses w/PCA and ADMIXTURE analyses. No previous command-li…

haplotype-based admixture inference and dating software

Interactive interface for pophelper using shiny web framework.

A data clustering package based on admixture ratios (Q matrix) of population structure analysis.

Diablo G25 - is a tool for conversion of VCF file to 23AndMe format and calculation of admixture scores from it.

Investigating the lack of transferability of polygenic risk scores for height in admixed individuals, using summary statistics from UK Biobank (British) individuals and testing on individuals with admixed ancestry from the Jackson Heart Study, Women's Health Initiative, and Health and Retirement Study.

Set of scripts used for the paper "A Neurodegenerative Disease Landscape of Rare Mutations in Colombia Due to Founder Effects"

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile