Code for analyzing medical images saved as .dicom files
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Updated
Oct 12, 2018 - Python
Code for analyzing medical images saved as .dicom files
A CNN based algorithm with 91% accuracy for brain tumor detection.
⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation
input ct data use U-net method systh mri
A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI
Forked to 'github.com/uwmri/QVT'
Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms
"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interface…
Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.
Code to run and analyze fMRI study of somatosensory detection task
Basic reconstruction scripts for data uploaded to mridata.org
k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)
Docker container for FiberNavigator for Brainlife.io
Calculating theoretical MRI images with both TI (T1-weighting) and TE (T2-weighting) of choice, from separate T1-weighted and T2-weighted sets of images. (Python 3)
Simulating T1- and T2-weighted MRI images with arbitrary values of TI or TE, respectively. (Python 3)
Tool for calculating swelling tablet eroding front's diffusion rate D and the rate of the swelling k from time series of either T2-maps or MRI images in FDF or Text Image format. (Python 3)
MATLAB code for extracting, converting and anonymising files in CTF MEG proprietary format.
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