Official AFNI source and documentation

Small Animal Magnetic Resonance Imaging via Python.

Tools for creating full TVB models from individual anatomical scans

Gray-matter Based Spatial Statistics

Introduction to dMRI

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients

Pipelines and tools for MRI analysis

Scripts for MRI preprocessing

Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.

Pipeline to process anatomical data, including microstructure metrics from DWI and MT data

Pyneapple is an advanced tool for analysing multi-exponential signal data in MR DWI images.

Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"

Along Tract Analysis of Diffusion Weighted Images

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Processing UHF MRI 🧠 data

Rdf and html forms for to.science (Toolbox Open Science). Injected via javascript.

Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"

FENRI (Fiber Orientations from Explicit Neural Representations) Implementation Repository