This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

Official AFNI source and documentation

Python code explaining how to display structural and functional fMRI data.

Standalone MATLAB implementation of permutation TFCE correction

fMRI Imaging Analysis

ASD diagnosis on ABIDE I

Resting state HRF estimation from BOLD-fMRI signal

Explain a black-box module in natural language.

Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity (TMI, 2022)

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

Multi-voxel pattern analyses methods based on ML & DL to decode the category of visual stimuli viewed by a human subject based on their recorded brain activity in fMRI form

Repository for the "Advanced Cognitive Neuroscience" course at Aarhus University, featuring analysis of MEG and fMRI data from thought-reading experiments at Aarhus Skejby Hospital, Denmark. This project delves into the potentials of neuroimaging in cognitive science research.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

Analysis scripts and movie annotations for NNDb

Causal Dynamic Network Modeling

These C/C++ source files consist of 150 classes, 300,000 lines of code, excluding a Qt-based user interface. Its functionality includes: GLM-statistics, hierarchical clustering, (non)-linear optimization, L1 and L2 norm minimization, Hungarian algorithm, EEG/MEG forward and inverse modelling, Boundary Element Method, spatio/temporal covariance m…

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

[KHBM] Winter School 2022 - Neuroimage Data Analysis using Python and Graph Neural Networks

A Python software package for BWAS

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering