EXIS is an interactive R shiny application for isoform-specific expression analysis.
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Updated
Jul 8, 2021 - R
EXIS is an interactive R shiny application for isoform-specific expression analysis.
An Efficeint and Fast Wrapper-based High-dimensional Feature Selection(SIFE) in MATLAB
MicAff is a genomic data analysis tool. Application made with Shiny. It is used to analyze the data from the microarray experiment. Running on a local server, it allows you to load CEL data, their initial processing and further analysis.
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
This is a final group project for Computational Biology (CS167) implementing Tempo (http://bcb.cs.tufts.edu/tempo/) on a unique Parkinson's dataset. This project was contributed to equally by Kevin Kapner, Carlos Lopez-Rodriguez, and Qing Zhu.
PCTA web application by Django
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
differential expression analysis using R 🧬
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
A python library to develop genomic data simulators
Analysis of microarray data from dHPC of rats treated with lps for 6h
Code for the future "Classification of microarray data" paper.
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
A pipeline to analyze DNA microarrays by Agilent.
TriCluster and microCluster gene expression clustering algorithms
Code for my master thesis: "Microarray data analysis in prediction of breast cancer metastasis"
Discriminant Analysis with Network PROcessing
A structural equation modeling approach for the identification of gene expression adaptation in breast cancer patients at grade specific level
protGear is a package for protein microarray data processing just before the main analysis.
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