SNP_data

This repository features python scripts I use in my day to day PhD work. Most of these are for 'one off use' or to solve a specific task, but some of them are just things that don't fit well into any of my other repositories, that I would like to keep a copy of. There usefulness may vary, and as always use at your own risk. If you sift through the files and find something useful to you, feel free to use it and let me know if there are aspects that confuse you. I may be able to help (seeing as I wrote them).

Name		Name	Last commit message	Last commit date
Latest commit History 86 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Linkmfex_readers		Linkmfex_readers
Omy_homeology		Omy_homeology
blast_data_analysis		blast_data_analysis
build_affymetrix_files		build_affymetrix_files
excel_to_csv_example		excel_to_csv_example
general_use_functions		general_use_functions
gridQTL_file_maker		gridQTL_file_maker
original_snp_genome_placement		original_snp_genome_placement
.Rapp.history		.Rapp.history
Blast_Hit_Ties.py		Blast_Hit_Ties.py
Blast_Merger.py		Blast_Merger.py
Blastfilter_outfmt7.py		Blastfilter_outfmt7.py
GBS_to_OneMap.py		GBS_to_OneMap.py
HapMap.fas.txt		HapMap.fas.txt
Hit_classifier.py		Hit_classifier.py
Hit_retainer.py		Hit_retainer.py
List_SNP_locations.txt		List_SNP_locations.txt
MapManipulation.py		MapManipulation.py
Map_append_in_OneMap.py		Map_append_in_OneMap.py
OneMap-LG-generator.py		OneMap-LG-generator.py
OneMap_to_MLS.py		OneMap_to_MLS.py
Poly_A_trim.py		Poly_A_trim.py
README.md		README.md
SNP_Locator.py		SNP_Locator.py
allele_cv.py		allele_cv.py
allele_sort.py		allele_sort.py
array_to_onemap_fmt.py		array_to_onemap_fmt.py
blast_hit_counter.py		blast_hit_counter.py
change_calculator.py		change_calculator.py
cleanup.py		cleanup.py
cross_validate.py		cross_validate.py
cross_validate_dict.py		cross_validate_dict.py
data_frame_to_onemap_sequences.py		data_frame_to_onemap_sequences.py
data_frame_to_onemap_sequences_extended.py		data_frame_to_onemap_sequences_extended.py
dilution_cal.py		dilution_cal.py
email_notification.py		email_notification.py
fasta_splitter.py		fasta_splitter.py
fastq_barcode_splitter.py		fastq_barcode_splitter.py
fastq_batch_searcher.py		fastq_batch_searcher.py
fastq_example.txt		fastq_example.txt
fastq_searcher.py		fastq_searcher.py
fastq_subsampler.py		fastq_subsampler.py
filter_sam_file.py		filter_sam_file.py
fun_post_for_blog.py		fun_post_for_blog.py
make_snp_files.py		make_snp_files.py
matching_genotypes-2.py		matching_genotypes-2.py
place_snps.py		place_snps.py
position_cross_reference.py		position_cross_reference.py
py_kwargs_decorator_examples.py		py_kwargs_decorator_examples.py
random_forest_feature_selection.R		random_forest_feature_selection.R
timer.py		timer.py
unittest_example.py		unittest_example.py

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