Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Comparison of methods for trajectory inference on single-cell data 🥇

A collection of 50+ trajectory inference methods within a common interface 📥📤

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Bystro genetic analysis (annotation, filtering, statistics)

Predicting regulatory DNA elements based on epigenomic signatures

L1000 peak deconvolution based on Bayesian analysis

Fast and simple algorithms for computing both LCSk and LCSk+

Bioinformatics Guide

This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.

Official code repository for JAX-CNV

deMULTIplex2: robust sample demultiplexing for scRNA-seq

CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data

Implementation of entropy of mixing algorithm in python

General bioinformatics functions in Python

RNA Backbone Torsion and Pseudotorsion Angle Prediction using Dilated Convolutional Neural Networks

Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.

This project aims on making the algorithms covered in the corresponding lecture at LMU Munich easier to understand by providing step-by-step logging and result visualization.