Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
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Updated
Mar 14, 2024 - C++
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
Tutorial for performing redundancy analysis
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
A tool for downloading HLA alleles, epitopes and frequencies
Complexity of Infection Estimation with Allele Frequencies
(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.
Long read structural variants in rare disease cohort
A python library to develop genomic data simulators
A tool to find reads supporting/opposing structural variant breakpoints
Code for NCD1 and NCD2 statistics to detect long-term balancing selection
Scripts and data processing notes for Russian exome sequencing AF paper
Calculate allele frequencies from a sequence multialignment.
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
An R script for generating allele frequencies from DNA/amino acid sequence alignments.
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
A Python script that generate population genotype frequency file from 1000G data
A command-line parser for VCF files designed for population genetics analyses.
ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.
Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'
A compilation of widely available forensic allele frequencies as an R package
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