Rapid large-scale prokaryote pan genome analysis
-
Updated
Apr 21, 2022 - Perl
Rapid large-scale prokaryote pan genome analysis
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Unified COVID-19 Dataset
Mathematical Modeling of Infectious Disease Dynamics
A tool to circularize genome assemblies
Antimicrobial Resistance Identification By Assembly
Finds SNP sites from a multi-FASTA alignment file
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
A set of tools to analyse the output from TraDIS analyses
Infectious Disease Sequencing Platform
Get assembly statistics from FASTA and FASTQ files
Improve the quality of a denovo assembly by scaffolding and gap filling
Python3 scripts to manipulate FASTA and FASTQ files
de novo virus assembler of Illumina paired reads
Multilocus sequence typing by blast using the schemes from PubMLST
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
Simulating epidemics using Python
R Package for individual based epidemiological models
Add a description, image, and links to the infectious-diseases topic page so that developers can more easily learn about it.
To associate your repository with the infectious-diseases topic, visit your repo's landing page and select "manage topics."