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39 Open 81 Closed
39 Open 81 Closed
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Issues list

Change "pubmlstspecies" source url
#340 opened Oct 24, 2023 by Nilad
Test run seems to not work properly
#338 opened Jun 22, 2023 by marcellobeltrami
2
How to determine SNP frequency in multi-copy genes (e.g., 23S rRNA).
#337 opened Jun 13, 2023 by slvrshot
2
Long read compatibility by tweaking the pipeline
#332 opened Feb 14, 2023 by varun8476
1
VFDB contains few genes that are not part of any cluster
#331 opened Feb 10, 2023 by PovilasMat
2
Failed cluster: cluster
#330 opened Jan 30, 2023 by Iqrarshad
Filter Bad MLST Profiles from PubMLST
#328 opened Aug 18, 2022 by Nilad
problems with resfinder and vfdb
#325 opened May 30, 2022 by fedeserral
2
Bug when dealing with insertions and deletions in assemblies
#324 opened May 25, 2022 by pirale
input data
#323 opened Mar 15, 2022 by daoerxianqiao
A cluster failed !! Any help would be great
#322 opened Mar 1, 2022 by MariaPerezVazquez
1
Incompatible Biopython version in Ariba Docker image
#317 opened Nov 7, 2021 by KuangXY3
NCBI Data Download Error
#316 opened Jul 11, 2021 by hackerzone85
1
NCBI Database Download Error
#313 opened Mar 15, 2021 by EmmaMills101
4
Conda package support for Python 3.7+
#312 opened Jan 28, 2021 by zmunro
4
Support for downloading cgMLST schemes?
#311 opened Dec 24, 2020 by slvrshot
1
ARIBA error in Galaxy
#309 opened Oct 13, 2020 by ajkarloss
Unable to download Escherichia coli#1 and Escherichia coli#2
#308 opened Oct 7, 2020 by RotimiDada
2
Biopython 1.78 not compatible because of Alphabet missing
#307 opened Sep 30, 2020 by besnarda
2
ariba.clusters.Error: At least one cluster failed
#306 opened Sep 18, 2020 by JFsanchezherrero
LooseVersion' object has no attribute 'version
#300 opened Jun 28, 2020 by mabouelk
5
How to adapt to single-ended data
#299 opened Jun 27, 2020 by feihongloveworld
README missing SPAdes as a dependency
#298 opened May 14, 2020 by kapsakcj
Nanopore and ARIBA compatibility?
#293 opened Mar 18, 2020 by Grandjean-Lapierre-Lab
Summary ignores one gene
#290 opened Feb 14, 2020 by GonzaloYebra
ProTip! no:milestone will show everything without a milestone.