Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
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Updated
Jun 4, 2024 - Python
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
This is the data repository for the publication of the same name.
Segmented HAPlotype Estimation and Imputation Tool
gwas workflow from raw intensity data to in-silico functional mapping
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
haplotype estimation, custom panel creation, and genotype imputation
Repository for running SeekDeep in a Docker Container
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
A tool to visualize the haplotype pattern and various information in excel.
THESIAS: Testing Haplotype Effects In Association Studies
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