Powerful plugins and add-ons for hackers

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

Scripts and procedures for detecting positively selected genes and codons in primates

Web app with interactive forecasts based on correlations

Structural interpretation of Killer cell immunoglobulin-like Receptors (KIR) haplotypes from raw short or long read sequences. It predicts the presence/absence of 16 KIR genes and then uses that to predict pairs of structural (gene-content and order) haplotypes.

This repository contains an AWS CloudFormation templates that will create the infrastructure required to stand up a Kong Enterprise cluster of EC2 nodes with Brain/Immunity enabled. This template cannot be used to implement Kong as an ingress controller to a Kubernetes cluster.

Project and team formed in the #WirVsVirus Hackathon of the German Federal Government

Corona Immunity Certificate - blockchain secured proof. Speed up economic recovery by allowing Covid19-immune persons to move freely to work, helping others and reduce infection fears.

Cnidarian Mpeg1 protein sequences used to analyze gene diversity

KIR haplotype assembly with medium/long reads

Prediction and characterization of T cell response by improved T cell receptors to antigen specificity with interpretable deep learning

🌱🧬 Collection of scripts for the paper: "PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave" (The Plant Cell 2022; PMID 35404429 🔗)

Prediction and characterization of T cell response by improved T cell receptors to antigen specificity with interpretable deep learning

Web application for querying data on interferon-stimulated genes (ISGs)

Data, code and graphs underlying the COVID-19 Complement Atlas.

ShanWoraz Website

Analysis and implementation of the simple SIR model, the SIR model with vaccination, and the SIR model with vaccination and immunity terms.

Computer vision model to interpret COVID-19 laminar flow immunity testing.

Differential equation models that incorporate waning immunity