snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
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Updated
Jan 19, 2024 - PostScript
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
Segmented HAPlotype Estimation and Imputation Tool
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
THESIAS: Testing Haplotype Effects In Association Studies
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
Repository for running SeekDeep in a Docker Container
A tool to visualize the haplotype pattern and various information in excel.
This is the data repository for the publication of the same name.
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
haplotype estimation, custom panel creation, and genotype imputation
gwas workflow from raw intensity data to in-silico functional mapping
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