Repository for running SeekDeep in a Docker Container
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Updated
Aug 17, 2023 - Dockerfile
Repository for running SeekDeep in a Docker Container
A tool to visualize the haplotype pattern and various information in excel.
This is the data repository for the publication of the same name.
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
haplotype estimation, custom panel creation, and genotype imputation
gwas workflow from raw intensity data to in-silico functional mapping
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
THESIAS: Testing Haplotype Effects In Association Studies
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
Segmented HAPlotype Estimation and Imputation Tool
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
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