C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
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Updated
Apr 28, 2024 - C++
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
💾 📃 "Reads to report" for public health and clinical microbiology
Graph realignment tools for structural variants
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
Efficient genotyping bi-allelic SNPs on single cells
A method for variant graph genotyping based on exact alignment of k-mers
A simple python library to identify the most likely strain from the population
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
genotyping by Mapping-free ALternate-allele detection of known VAriants
Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
An efficient genetic data imputation pipeline
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
emm Automatic Isolate Labeller
Toolkit for VNTR genotyping and repeat-pan genome graph construction
Python library for simple and complex indels.
An in silico tool to predict Shigella serotypes
workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow
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