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31 Open 47 Closed
31 Open 47 Closed
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Issues list

Matching SNPs to cell barcode
#124 opened May 1, 2024 by malonzm1
Unable to install through anaconda documentation Improvements or additions to documentation
#120 opened Mar 20, 2024 by Angelos-Gk
7
Could not retrieve index file for .bam
#119 opened Mar 18, 2024 by nansne
3
Strand specificity
#118 opened Mar 7, 2024 by flde
1
Integrating mouse SNPs and scRNA-seq data for imprinted gene identification
#115 opened Jan 30, 2024 by singcell
Converting cellsnp-lite outputs to vartrix's consensus matrix documentation Improvements or additions to documentation
#114 opened Jan 12, 2024 by mdmanurung
1
Is there a good way to identify and add the gene names to the output vcfs?
#113 opened Dec 11, 2023 by pchatterjee7
1
Use cellSNP on a big BAM file enhancement New feature or request
#111 opened Nov 22, 2023 by RosaDeSa
1
cellsnp-lite on data from 1 donor
#106 opened Oct 17, 2023 by astaburuaga-garcia
2
the resulting file has only the title and no content
#102 opened Aug 30, 2023 by suhuanhou
6
scRNA-seq from different donors as a genotype-vcf input for vireo enhancement New feature or request
#100 opened Aug 14, 2023 by mariafiruleva
6
-ldeflate is missing in Makefile after I executed ./configure
#98 opened Jun 15, 2023 by darkcircle
postprocessing cellsnp outputs
#96 opened Jun 9, 2023 by maxozo
1
Error when using more than 2 bam files with mode 1B
#94 opened May 30, 2023 by cameronyoungpark
5
OTH ratio 1 good first issue Good for newcomers
#93 opened May 24, 2023 by flde
5
The 19 of 20 parallelized workers always strike far before the whole job is done enhancement New feature or request
#88 opened Mar 17, 2023 by mimi3421
3
runtime and expected output
#78 opened Dec 5, 2022 by ahoffrichter
6
Automatically detect all chromosomes in bam enhancement New feature or request
#76 opened Oct 28, 2022 by chilampoon
2
single cell RNA-seq cellsnp lite error mode 2b+ 1a
#75 opened Oct 19, 2022 by drlaurenwasson
1
Had any scripts to pick the distinctive SNP site from vireo file GT_donors.vireo.vcf.gz gene to distinguish multiple sample using PCR experiment
#73 opened Sep 7, 2022 by honghh2018
1
how can i build the preprocess vcf for mouse, like human common SNP vcf file, using GATK google warehouse snp data
#72 opened Sep 7, 2022 by honghh2018
1
ELBO plot decreasing instead of increasing to a plateau
#71 opened Aug 22, 2022 by haigdjambazian
2
Huge 10X scRNA-seq mouse data
#70 opened Jul 20, 2022 by alexfernandes8a
1
Calling SNPs using multiple bam files with single cell data
#65 opened Jun 28, 2022 by scachero
5
Incorrect parameter passing causes segmentation fault
#45 opened Jun 4, 2022 by adbeggs
1
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