The CMO Cell-Free DNA Informatics (CCI) group’s mission is to develop and apply computational methods to organize, analyze and understand genomic data generated from cfDNA assays such as MSK-ACCESS. The group is responsible for all computational infrastructure needed to deploy, run, and deliver results for research cfDNA assays in a production setting for Center for Molecular Oncology (CMO) at Memorial Sloan Kettering Cancer Center (MSKCC).
CMO Cell-Free DNA (cfDNA) Informatics Team
This organization is created to host all the codebase related to cfDNA based assay in CMO at MSKCC
- 6 followers
- New York, NY
- https://cmo-ci.gitbook.io/cci/
- @MskccCMO
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Repositories
Showing 10 of 47 repositories
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- postprocessing_variant_calls Public
This repository helps with processing for variant calls made by a given caller
- uncollapsed_bam_generation Public
Workflow for making MSK-ACCESS standard binary alignment mapping file.
- bam_collapsing Public
Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS
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- genomenexus Public
- vardict-java Public
