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1001genomes

Here are 3 public repositories matching this topic...

Gregor-Mendel-Institute / SNPmatch

A simple python library to identify the most likely strain from the population

snps pipeline genotype genotyping-by-sequencing arabidopsis genotyping snpmatch arageno 1001genomes

Updated Jan 11, 2024
Python

rbpisupati / nf-snpmatch

Nextflow pipeline for SNPmatch (https://github.com/Gregor-Mendel-Institute/SNPmatch.git)

nextflow genotyping-by-sequencing arabidopsis snpmatch arageno 1001genomes

Updated Apr 1, 2022
Nextflow

hagax8 / arabidopsis_viz

Clustering of 1,135 Arabidopsis thaliana genomes from 1001 Genomes Project (https://1001genomes.org/)

clustering gtm ancestry t-sne arabidopsis 1001genomes

Updated Nov 2, 2018
HTML

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