pipeline to perform gbs and genetic fitness analysis
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Updated
Feb 15, 2022 - Shell
pipeline to perform gbs and genetic fitness analysis
A clinical decision-support system to identify pharmacogenomics profiles based on subjects genotype of five core genes. The paper has been published in the Journal of Personalized Medicine.
CODEHOP-mediated genotyping of HIV-1
Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.
A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
Repo containing all scripts associated with Mahoenui giant wΔtΔ population genomic analysis from GBS data
π This repository is associated with the manuscript Pacheco et al. (2020).
Nextflow pipeline for SNPmatch (https://github.com/Gregor-Mendel-Institute/SNPmatch.git)
A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
A simple python library to identify the most likely strain from the population
Population assignment analysis using R
stackr: an R package to run stacks software pipeline
Genotype Calling with Uncertainty from Sequencing Data in Polyploids πππ₯π π₯
Support Vector Structural Variation Genotyper
RADseq Data Exploration, Manipulation and Visualization using R
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