RADseq Data Exploration, Manipulation and Visualization using R
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Updated
May 15, 2024 - HTML
RADseq Data Exploration, Manipulation and Visualization using R
stackr: an R package to run stacks software pipeline
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
Estimation of per-individual inbreeding coefficients under a probabilistic framework
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
Estimation of pairwise distances under a probabilistic framework
Estimation of per-individual inbreeding tracts under a probabilistic framework
Utilities for analyzing next generation sequencing data.
SNP genotyping in polyploids
command-line tools for the management of genotype likelihoods and allele counts
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
A pipeline to impute plink genotypes to 1000 Genomes phase 1
Genotype likelihood simulator for VCF/BCF files
Genotyping of segregating mobile elements insertions
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
Estimating temporally variable selection intensity from ancient DNA data
Perl software to cluster SNPs based on its genotype.
Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses. Flexible to datasets that combine high/low coverage and historical/fresh samples.
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