Pinned

1. cgroza/GraffiTE cgroza/GraffiTE Public

   GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

   R 80 3

2. TE-Aid TE-Aid Public

   Annotation helper tool for the manual curation of transposable element consensus sequences

   R 38 6

3. dnaPipeTE dnaPipeTE Public

   dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is…

   Dockerfile 46 10

4. dnaPT_utils dnaPT_utils Public

   A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3

   Shell 5 1

5. TypeTE TypeTE Public

   Genotyping of segregating mobile elements insertions

   Perl 19 1

6. typeref typeref Public

   Bi-allelic genotyping of reference transposable elements

   Python