Official code repository for GATK versions 4 and up
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Updated
May 9, 2024 - Java
Official code repository for GATK versions 4 and up
vSNP -- validate SNPs
Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI
A modular annotation tool for genomic variants
The GeneWeaver database interaction code.
The nuclear package for various bioinformatics projects like GSEA.jl 🧬
A fast and sensitive gapped read aligner
This repo is a mirror from Gencove's Gitlab repo
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Detecting mutational signatures via bayesian inference and a reference catalog
CLI tool for flexible and fast adaptive sampling on ONT sequencers
A client library for the integration and analysis of heterogeneous functional genomics data.
Data intensive science for everyone.
Automated Pipeline for Variant/Haplotype Calling and Filtering
Simulate genealogical trees and genomic sequence data using population genetic models
Rapidly extract a flexible bacterial core genome alignment
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