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@EPPIcenter

EPPIcenter

A systems epidemiology approach to complex infectious disease dynamics: state-of-the-art data collection, molecular technologies, & computational analysis

Pinned

  1. dcifer dcifer Public

    Distance for Complex Infections: Fast Estimation of Relatedness (R package)

    R 5 3

  2. moire moire Public

    MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

    C++ 7 3

  3. flexfit flexfit Public

    Flexible format standard curve fitting and data processing (R package)

    R 1

  4. liinc-Ab-dynamics liinc-Ab-dynamics Public

    Source code and data for 'SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay'

    R

  5. THEREALMcCOIL THEREALMcCOIL Public

    A Markov chain Monte Carlo method that estimates complexity of infection and population allele frequencies using SNP data obtained from Sequenom or similar types of SNP assays.

    C 5 6

  6. scale-it-2 scale-it-2 Public

    R 2

Repositories

Showing 10 of 24 repositories
  • HTML 1 3 17 3 Updated May 1, 2024
  • lab-handbook Public

    EPPIcenter Lab Handbook

    CSS 0 CC0-1.0 1 0 0 Updated May 1, 2024
  • R 3 12 12 1 Updated Apr 11, 2024
  • geno_timelines Public

    visualization of longitudinal qPCR or genotyping data

    0 0 0 0 Updated Mar 19, 2024
  • moire Public

    MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

    C++ 7 GPL-3.0 3 1 0 Updated Mar 18, 2024
  • dcifer Public

    Distance for Complex Infections: Fast Estimation of Relatedness (R package)

    R 5 3 1 0 Updated Dec 13, 2023
  • eppicenter.r-universe.dev Public

    The EPPIcenter R-Universe

    0 0 0 0 Updated Nov 3, 2023
  • flexfit Public

    Flexible format standard curve fitting and data processing (R package)

    R 1 0 0 0 Updated Aug 2, 2023
  • MicroSPAT Public archive

    MicroSPAT- MicroSatellite Parameterized Analysis Tools A collection of tools for semi-automated analysis of raw capillary electrophoresis (CE) data output by the ABI 3730, and has been designed specifically for working with multi-allelic samples. Developed to improve reproducibility and consistency of microsatellite analysis between analysts.

    TypeScript 1 AGPL-3.0 0 0 1 Updated May 31, 2023
  • sample_db Public archive

    Application for managing a sample tracking DB

    TypeScript 3 2 13 19 Updated May 31, 2023

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