Provides a means of running the Avida-ED educational software that guards against premature bit-rot.
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Updated
May 5, 2023 - Dockerfile
Provides a means of running the Avida-ED educational software that guards against premature bit-rot.
Source code for ManyEcoEvo Manuscript
Evolutionary genomics of chromosomal inversions in Atlantic herring
Code & data relevant for someone interested in conducting multivariate models using Bayesian statistics in #R #MCMCGlmm. In our analyses here, we use data on eastern grey kangaroo juvenile behaviour and survival and maternal behaviour.
Scripts associated with understanding the genomic features of NLRs in Arabidopsis thaliana Col-0
This directory contains code for the paper A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean. If you want to run this code, I recommend downloading this code and the data directory from Data Dryad.
Analysis of simulated genotype alignment data for use in CNN estimators (Johnson and Wilke, 2022)
Breitman Lab website
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
Rcpp extension of eigvaldisp
Working on my deliverables et al. for the Species & Speciation module in my Honours year (run by A/Prof Muthama Muasya)
Leo Blondel, Savandara Besse, Cassandra Extavour (2021)
R package for average evolvability measures
B+ A database of Positively Selected Sites discovered with ADOPS
My GitHub Page
A Discrete-time Markov Process for Predicting Influenza Evolution.
Simulating evolution of behavioral traits with Python
Software for analysing Many-Analysts' style data and generating the ManyEcoEvo project data
My slides for my lecture on biodiversity, evolution and taxonomy for a short course for high school biology teachers, organised by the University of Cape Town's Schools Development Unit
Pipeline for comparative transcriptomics across species
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