This repository contains the python package for Helical

Scripts and parameters for generating/analyzing fastSimcoal2 simulations, as part of the IMLS_GCCO project comparing ex situ conservation measures between SNP and microsatellite marker types

Program takes in a string of DNA, and converts it to a protein chain.

R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R

genomic alignment similarity search tool

Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the …

Easy to use and modify implementation of Smith-Waterman Algorithm.

toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files

Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

This project provides the classification of DNA sequences for Breast cancer prediction which into promoter regions associated. Using machine learning and deep learning techniques, I analyze and try to predict sequence data for negative and positive answers in cancer prediction.

Welcome to my Python Projects Repository, Explore a diverse collection of Python scripts, from simple puzzles to complex problems. Browse, contribute, and enhance your Python skills!

Efficient compression of biological data

Command-line software designed to seek regular expressions within DNA sequences.

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Directed Evolution in Silico

Repository for simple tool to work with fasta, fastq files and bio seqs

Find matching DNA code within text string.

Algorithms for Bionformatics - Python Module to handle biological sequences and run common algorithms and techniques

The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.