forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
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Updated
May 16, 2024 - Java
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.
UCSC Genome Browser source tree. Stable branch: "beta".
Infectious Disease Sequencing Platform
Kuan-Hao Chao's Website
Codebase: "Sequence characteristics and an accurate model of high-occupancy target loci in the human genome"
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
An FPGA design for simulating biological neurons
A comprehensive library for computational molecular biology
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
Anchor Residue Identification
Sitio web del Grupo de Biología Computacional
The nuclear package for various bioinformatics projects like GSEA.jl 🧬
Website for Mangul Lab.
Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras.
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
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