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35 Open 422 Closed
35 Open 422 Closed
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Issues list

Remove networkx<3 version constraint
#1442 opened May 13, 2024 by bgyori
Having problem with Python 3.12 at macOS
#1438 opened Feb 14, 2024 by muhammadshoaib
3
Extend INDRA for cellular communication
#1398 opened Nov 15, 2022 by Siliegia
2
Representing fusion proteins
#1394 opened Oct 4, 2022 by cthoyt
Add ECOTOX Knowledgebase source A database source of INDRA statements
#1362 opened Dec 11, 2021 by cthoyt
Add PyOBO Client
#1343 opened Oct 26, 2021 by cthoyt
MeSH terms for protein families incorrectly output by PybelProcessor
#1324 opened Aug 17, 2021 by cthoyt
1
Demo adding version information in BioGRID processor
#1279 opened Apr 21, 2021 by cthoyt
@cthoyt
Review DrugBank statement polarities
#1263 opened Mar 30, 2021 by bgyori
1
1
Add Drug Target Commons as source source A database source of INDRA statements
#1257 opened Mar 29, 2021 by cthoyt
1
@cthoyt
Add DrugCentral as source source A database source of INDRA statements
#1256 opened Mar 29, 2021 by cthoyt
@cthoyt
Highlight phosphorylations and include information about site mapping in HTML assembler
#783 opened Jan 20, 2019 by cthoyt
1
Expand families should be moved into preassembler module and documented
#742 opened Dec 11, 2018 by bgyori
Create, organize, and apply dedicated INDRA exceptions enhancement
#486 opened Apr 9, 2018 by pagreene Refactoring
@pagreene
3
Preassembly should extend across certain Statement types
#473 opened Apr 4, 2018 by bgyori Refactoring
@johnbachman @bgyori @pagreene
Rename various equality methods for Statements
#441 opened Mar 21, 2018 by bgyori Refactoring
@bgyori
Add optional resource file to bypass cBio portal enhancement
#325 opened Sep 24, 2017 by bgyori
@bgyori
Add Neddylation Statement type
#322 opened Sep 23, 2017 by johnbachman
1
Extend ndex_cx processor to include nodes representing chemicals, other groundings, etc.
#302 opened Sep 15, 2017 by johnbachman
Semantics of assoc-with links in EKBs ignored
#276 opened Aug 29, 2017 by bgyori
Grounding of micro-RNAs
#255 opened Jul 7, 2017 by bgyori
3
Activity type for micro-RNAs
#254 opened Jul 7, 2017 by bgyori
4
INDRA json edge attribute in CX assembler should be changed
#242 opened Jun 22, 2017 by bgyori
@kkaris
2
Use context / represents / alias in CX assembler to represent grounding
#239 opened Jun 21, 2017 by bgyori
1
Generate full rule set in ModelChecker to prevent loops across redundant sources
#234 opened Jun 14, 2017 by johnbachman
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