ČOI adblock list
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Updated
May 26, 2024
ČOI adblock list
PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Back up for the review and scripts used in the article "The evolutionary outcomes of climate-change-induced hybridization in insect populations." published in COIS,
This is the repository for the PAP-DPB2 Phylogenetic analysis project.
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
Complexity of Infection Estimation with Allele Frequencies
MalariaGEN Plasmodium falciparum Community Project analysis using coiaf
Waste Management for Captain of Industry game
Unpowered Balancers for Captain of Industry game
A python script that makes it easy to analyze multiple COIs (Communities of Interest) and generate heat maps and metrics of interest.
An R Shiny application to identify cochineal genetic sequences for 12S rRNA, 18S rRNA, or COI.
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
OX COI Messenger - a Flutter app for the COI (Chat Over IMAP) standard
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
Data flow to process COI metabarcodes
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
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