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@Hajibabaei-Lab

Hajibabaei Lab

Our group deals with the study of evolutionary processes and the use of sequence information to investigate biodiversity, ecosystems, and environmental change.

Pinned

  1. HajibabaeiEtAl2019b_benthos_vs_water HajibabaeiEtAl2019b_benthos_vs_water Public

    Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonit…

    R

  2. HajibabaeiEtAl2019 HajibabaeiEtAl2019 Public

    Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."

    R 1

Repositories

Showing 7 of 7 repositories
  • LANDMark Public Forked from jrudar/LANDMark

    Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.

    Jupyter Notebook 0 MIT 3 0 0 Updated Jul 12, 2023
  • webPortal Public

    STREAM Watershed Project

    R 0 0 0 0 Updated Jun 21, 2022
  • RobinsonEtAl2022_TorontoHarbour Public
    R 0 0 0 0 Updated May 27, 2022
  • SCVUC_COI_metabarcode_pipeline Public

    Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes

    Perl 1 GPL-3.0 1 0 0 Updated Jul 16, 2020
  • HajibabaeiEtAl2019b_benthos_vs_water Public

    Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."

    R 0 0 0 0 Updated Dec 20, 2019
  • HajibabaeiEtAl2019 Public

    Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."

    R 1 0 0 0 Updated Dec 20, 2019
  • CO1testing Public

    COI sequences files used to test the COI Classifier Web Portal

    0 0 0 0 Updated Jun 27, 2018

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