COI sequences files used to test the COI Classifier Web Portal
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Updated
Jun 27, 2018
COI sequences files used to test the COI Classifier Web Portal
This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
A set of Xcode file templates to use when developing on OX Coi
Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
Data flow to process COI metabarcodes
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
OX COI Messenger - a Flutter app for the COI (Chat Over IMAP) standard
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
An R Shiny application to identify cochineal genetic sequences for 12S rRNA, 18S rRNA, or COI.
A python script that makes it easy to analyze multiple COIs (Communities of Interest) and generate heat maps and metrics of interest.
Unpowered Balancers for Captain of Industry game
Waste Management for Captain of Industry game
MalariaGEN Plasmodium falciparum Community Project analysis using coiaf
Complexity of Infection Estimation with Allele Frequencies
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
This is the repository for the PAP-DPB2 Phylogenetic analysis project.
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