Perl modulino used to analyze BLAST output and BLAST database in ClickHouse (columnar DBMS for OLAP and analytics).
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Updated
Nov 11, 2016
Perl modulino used to analyze BLAST output and BLAST database in ClickHouse (columnar DBMS for OLAP and analytics).
It compares the efficiency of the BLAST algorithm in NCBI and UniProt for protein sequences of three different sizes: Na + channel, dopamine and insulin
Calculating the metrics for an input fasta file, formatting an assembly fasta file for blast, blast input gene fasta file to assembly blastdb, parse blast output file into .bp file, parse .bp file to identify hits, extract those hits from assembly fasta file and output them in output file .
The local version of the RecBlast
Course materials for the IBioIC Introduction to Bioinformatics training course
The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.
SparkBLAST is a parallelization of a sequence alignment application (BLAST) that employs cloud computing for the provisioning of computational resources and Apache Spark as the coordination framework. Here you will find suplementary material to the article entitled "SparkBLAST: Scalable BLAST processing using in-memory operations", submitted to …
Most up-to-date scripts used in the Palumbi lab
Animation of fireworks like blast effect
Workflow to accelerate the annotation of unkown coding sequences
A typesafe Scala BLAST API
blast docker image and cyverse integration
A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.
Retrieve and create a custom BLAST database by taxonomic search
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