Skip to content

A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.

License

Notifications You must be signed in to change notification settings

harper357/bam_spot_check

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

17 Commits
 
 
 
 
 
 
 
 

Repository files navigation

A tool to spot check BAM files by sending 10 reads to the NCBI BLAST server.

Warnings: Try not to use this repeatedly in rapid succession. NCBI will ban you. This is the usual use at your own risk, I take no responsibility for anything.

Input: BAM file OR FASTA file OR nucleotide sequence

Requirements: Python 3.5 or above samtools

About

A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages