Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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Updated
May 17, 2024 - Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
Differential methylation: Easy, Fast, Identification and ANnoTation
Arioc: GPU-accelerated DNA short-read alignment
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
Targeted Amplicon Bisulfite Sequencing Analysis Tool
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
Bisulfite Sequencing Virus integration Finder
bisulfite sequencing pattern analysis tool
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
Bisulfite-seq data Workflow Automation Software and Protocols
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting
Snakemake workflow for the processing of EMseq data
Tools to analyse allele-specific methylation using bisulfite sequencing data
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