Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021
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Updated
Nov 1, 2021 - Python
Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021
Finite State Projection algorithms for chemical reaction networks
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
iCodon customizes gene expression based on the codon composition
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
Code behind the work "Multiple Synaptic Contacts Combined with Dendritic Filtering Enhance Spatio-Temporal Pattern Recognition of Single Neurons", bioRxiv 2022
Simulation of agents competing for resources with different strategies
Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling
4 dimensional model for neuronal modelling in Julia
Bayesian inference of stochastic cellular processes with and without memory in Python.
A Game Theoretic Approach For Rendering Immersive Experiences In The Metaverse
Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.
Streaming over networks
PAR2 Activation and calcium signaling Reaction Model in PySB
A repository for the final project in MathBio class, exploring the dynamics of natural pattern adaptation through the lens of a cellular automata model. Contains code, documentation, and resources related to the project.
Virtual population generation, fitting, and benchmarking.
An object-oriented model of the workings of the human body written in java and scala
A prototype of a probabilistic research model for a math professor. It is meant to simulate a white blood cell chasing a bacteria.
Implementation of a PINN solver for biological differential equations
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